{
  "nbformat": 4,
  "nbformat_minor": 0,
  "metadata": {
    "colab": {
      "name": "00_pktools_gdrive_install",
      "provenance": [],
      "collapsed_sections": []
    },
    "kernelspec": {
      "name": "python3",
      "display_name": "Python 3"
    }
  },
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "ZhnJLPwfaahc"
      },
      "source": [
        "# Install pktools on the gdrive and be able to use from any Colab"
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "_8h5seBGCRa1",
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "outputId": "2cd7c46e-c4a6-4f6e-fe10-d558191d1f75"
      },
      "source": [
        "from google.colab import drive\n",
        "drive.mount('/gdrive')"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Mounted at /gdrive\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "IIc_Ans2a4L1",
        "outputId": "4502b02e-c694-46f8-96eb-0ebc86818e62"
      },
      "source": [
        "! ls /gdrive/MyDrive"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            " auto\n",
            " Big_blue\n",
            "'Colab Notebooks'\n",
            "'Dataset for global stream network and MOSQLAND.gdoc'\n",
            "'Discharge Tasks.gdoc'\n",
            " Elena_intro.gdoc\n",
            " GeoCompCourse\n",
            " GeoCompYaleMay2020\n",
            " grants\n",
            "'ID PASSPORT'\n",
            " LandscapeGenetic\n",
            " Lawsuit\n",
            " Margosa\n",
            " panniers-trailers.pdf\n",
            " RDOC_CMS\n",
            " review\n",
            " SE_data\n",
            " Sofia_intro.gdoc\n",
            " Stream_Variables_dataset_selected.gsheet\n",
            " Taino\n",
            " yale\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "Qf7E6ZyZCEx0"
      },
      "source": [
        "! mkdir /gdrive/MyDrive/SE_data/pktools_local"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "hhZMEwsiCSqv",
        "outputId": "6b7fc79c-87ba-4fed-85a5-09dea54f17f7"
      },
      "source": [
        "%cd /gdrive/MyDrive/SE_data/"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "/gdrive/MyDrive/SE_data\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "ARXqokDCFgH4",
        "outputId": "916476dd-2608-4d30-d88d-ec1bc0c56f41"
      },
      "source": [
        "! apt-cache depends pktools "
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "pktools\n",
            "  Depends: <gdal-abi-2-2-3>\n",
            "    libgdal20\n",
            "  Depends: libalgorithms1\n",
            "  Depends: libc6\n",
            "  Depends: libfann2\n",
            "  Depends: libfileclasses1\n",
            "  Depends: libgcc1\n",
            "  Depends: libgdal20\n",
            "  Depends: libgsl23\n",
            "  Depends: libgslcblas0\n",
            "  Depends: libimageclasses1\n",
            "  Depends: liblas3\n",
            "  Depends: liblasclasses1\n",
            "  Depends: libstdc++6\n",
            "  Enhances: gdal-bin\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "53VoPSUbCgDk",
        "outputId": "d4a5c3d0-d953-45be-b640-8530c97feba1"
      },
      "source": [
        "! apt install --download-only  libalgorithms1 libfann2 libfileclasses1 libgsl23 libgslcblas0 libimageclasses1 liblas3 liblasclasses1 pktools"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "Reading package lists... Done\n",
            "Building dependency tree       \n",
            "Reading state information... Done\n",
            "Suggested packages:\n",
            "  libfann-dev libfann-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info\n",
            "  | gsl-ref-html libgeotiff-epsg\n",
            "The following NEW packages will be installed:\n",
            "  libalgorithms1 libfann2 libfileclasses1 libgsl23 libgslcblas0\n",
            "  libimageclasses1 liblas3 liblasclasses1 pktools\n",
            "0 upgraded, 9 newly installed, 0 to remove and 15 not upgraded.\n",
            "Need to get 2,347 kB of archives.\n",
            "After this operation, 9,702 kB of additional disk space will be used.\n",
            "Get:1 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libgslcblas0 amd64 2.4+dfsg-6 [79.7 kB]\n",
            "Get:2 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libgsl23 amd64 2.4+dfsg-6 [823 kB]\n",
            "Get:3 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libimageclasses1 amd64 2.6.7.3+ds-1 [57.9 kB]\n",
            "Get:4 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libalgorithms1 amd64 2.6.7.3+ds-1 [130 kB]\n",
            "Get:5 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libfann2 amd64 2.2.0+ds-3 [64.5 kB]\n",
            "Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libfileclasses1 amd64 2.6.7.3+ds-1 [12.7 kB]\n",
            "Get:7 http://archive.ubuntu.com/ubuntu bionic/universe amd64 liblas3 amd64 1.8.1-6build1 [270 kB]\n",
            "Get:8 http://archive.ubuntu.com/ubuntu bionic/universe amd64 liblasclasses1 amd64 2.6.7.3+ds-1 [15.2 kB]\n",
            "Get:9 http://archive.ubuntu.com/ubuntu bionic/universe amd64 pktools amd64 2.6.7.3+ds-1 [894 kB]\n",
            "Fetched 2,347 kB in 1s (2,428 kB/s)\n",
            "Download complete and in download only mode\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "sfwOt4MPGJS8",
        "outputId": "c3d470ee-35b5-4af4-828d-36e75abcfe7c"
      },
      "source": [
        "! ls -l  /var/cache/apt/archives/"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "total 2312\n",
            "-rw-r--r-- 1 root root 129872 Feb  7  2018 libalgorithms1_2.6.7.3+ds-1_amd64.deb\n",
            "-rw-r--r-- 1 root root  64464 Apr 27  2016 libfann2_2.2.0+ds-3_amd64.deb\n",
            "-rw-r--r-- 1 root root  12744 Feb  7  2018 libfileclasses1_2.6.7.3+ds-1_amd64.deb\n",
            "-rw-r--r-- 1 root root 823254 Aug 21  2017 libgsl23_2.4+dfsg-6_amd64.deb\n",
            "-rw-r--r-- 1 root root  79704 Aug 21  2017 libgslcblas0_2.4+dfsg-6_amd64.deb\n",
            "-rw-r--r-- 1 root root  57884 Feb  7  2018 libimageclasses1_2.6.7.3+ds-1_amd64.deb\n",
            "-rw-r--r-- 1 root root 270088 Dec 17  2017 liblas3_1.8.1-6build1_amd64.deb\n",
            "-rw-r--r-- 1 root root  15248 Feb  7  2018 liblasclasses1_2.6.7.3+ds-1_amd64.deb\n",
            "-rw-r----- 1 root root      0 Sep 21 17:17 lock\n",
            "drwx------ 1 _apt root   4096 Jan  6 02:10 partial\n",
            "-rw-r--r-- 1 root root 893904 Feb  7  2018 pktools_2.6.7.3+ds-1_amd64.deb\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "id": "sv1x-7FvCo37"
      },
      "source": [
        "! dpkg   -x  /var/cache/apt/archives/libalgorithms1_2.6.7.3+ds-1_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/libfann2_2.2.0+ds-3_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/libfileclasses1_2.6.7.3+ds-1_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/libgsl23_2.4+dfsg-6_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/libgslcblas0_2.4+dfsg-6_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/libimageclasses1_2.6.7.3+ds-1_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/liblas3_1.8.1-6build1_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/liblasclasses1_2.6.7.3+ds-1_amd64.deb  pktools_local\n",
        "! dpkg   -x  /var/cache/apt/archives/pktools_2.6.7.3+ds-1_amd64.deb  pktools_local"
      ],
      "execution_count": null,
      "outputs": []
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "uEZ-qsgwdvCT",
        "outputId": "51070167-8be3-44ea-fce2-9c86d36219e5"
      },
      "source": [
        "! ls pktools_local/usr"
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "bin  lib  share\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "UWbFwFvLH2KX",
        "outputId": "50bf2631-2ee9-4d19-e715-e00841beb7ca"
      },
      "source": [
        "! find pktools_local -name \"libfileClasses*\" "
      ],
      "execution_count": null,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "pktools_local/usr/lib/x86_64-linux-gnu/libfileClasses.so.1.6.1\n",
            "pktools_local/usr/lib/x86_64-linux-gnu/libfileClasses.so.1\n"
          ],
          "name": "stdout"
        }
      ]
    },
    {
      "cell_type": "code",
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "vsPT5xulEG65",
        "outputId": "a87d6a45-c020-453d-d085-f7fb34e8212b"
      },
      "source": [
        "%%bash \n",
        "LD_LIBRARY_PATH=/gdrive/MyDrive/SE_data/pktools_local/usr/lib/x86_64-linux-gnu  \n",
        "PATH=$PATH:/gdrive/MyDrive/SE_data/pktools_local/usr/bin\n",
        "pkfilter -h"
      ],
      "execution_count": 30,
      "outputs": [
        {
          "output_type": "stream",
          "text": [
            "shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory\n",
            "bash: line 3: /gdrive/MyDrive/SE_data/pktools_local/usr/bin/pkfilter: Permission denied\n"
          ],
          "name": "stderr"
        }
      ]
    }
  ]
}